PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007388001
Common NameVIT_07s0151g00440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 534aa    MW: 59187.2 Da    PI: 7.3615
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007388001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-16257316155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSVIVT01007388001 257 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 316
                        78*******************988886678446*************************98 PP

2AP2461.3e-14361410355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSVIVT01007388001 361 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 410
                        9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-17257326IPR016177DNA-binding domain
PfamPF008474.9E-13257316IPR001471AP2/ERF domain
CDDcd000183.79E-22257324No hitNo description
Gene3DG3DSA:3.30.730.103.3E-16258325IPR001471AP2/ERF domain
SMARTSM003803.1E-29258330IPR001471AP2/ERF domain
PROSITE profilePS5103219.203258324IPR001471AP2/ERF domain
PRINTSPR003673.5E-6259270IPR001471AP2/ERF domain
CDDcd000186.81E-25359420No hitNo description
SuperFamilySSF541711.57E-17359419IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-18360418IPR001471AP2/ERF domain
SMARTSM003801.2E-33360424IPR001471AP2/ERF domain
PROSITE profilePS5103219.177360418IPR001471AP2/ERF domain
PfamPF008472.2E-9361410IPR001471AP2/ERF domain
PRINTSPR003673.5E-6400420IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDVPSDPHHH HQTQPPPTLT AVSTPVSTGF FPSPSHLNYS GIYYGVEGEN GGFYSPLSVM  60
PLKSDGSLCI MEALSRSQPQ GMVPTSTPKL EDFFGGATMG THHYESNDRE AMALSLDSMY  120
YHQNPENEPN KTKETQLAAD GNLQLPNMAD TGLPGMKNWV SRNYPTNESL EHKMIGCMSD  180
NGGESGSMST MGYGDLQSLS LSMSPGSQSS CVTGSQQISP TVTECVAMDT KKRGPDKVDQ  240
KQIVHRKSLD TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QVYLGGYDME  300
EKAARAYDLA ALKYWGPSTH INFPLENYQQ ELENMKNMTR QEYVAHLRRK SSGFSRGASM  360
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG VNAVTNFDIT  420
RYDVERIMAS SNLLAGELAK RNKDMESTSE AKNLNPSVHT SSGEAILSQE NNQSESGWKM  480
VLYHLPMLFA IPPSAPKFFA TPANTVNSWI PSAQLRPAIP MPHMPVFAAW TDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.149650.0bud| inflorescence| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3821410.0FQ382141.1 Vitis vinifera clone SS0ABG6YB01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010645298.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ389140.0ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLF6I7I70.0F6I7I7_VITVI; Putative uncharacterized protein
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-173AP2 family protein